[Mitarbeiter.zoologie] R script for mass-barcoding

[Patrycja]

Dear all,

 

Some time ago I wrote a function to identify many sequences at once using
the online database of ncbi and transform them neatly. You still have to get
the hit table from ncbi webpage. This might not be the fastest solution but
if you don't like software like Geneious or you don't have a local database,
you can check out the script on my github:
https://github.com/papluta/Barcoding_script/blob/main/SCRIPT_BARCODING.R

 

There's a function to get the single best hit or 3 best hits for each
sample.

 

Best,

Patrycja

 

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