[Mitarbeiter.zoologie] some new papers of interest

[Eckart Stolle]

Some interesting new papers, which might be relevant for some.


# for Variant Caller comparison

Heng Li at al. New synthetic-diploid benchmark for accurate variant calling evaluation.

https://www.biorxiv.org/content/early/2017/11/22/223297


# RNAseq

Single-molecule fluorescent amplification of RNA using clampFISH probes

https://www.biorxiv.org/content/early/2017/11/21/222794


# DNAprep in 30 sec

Nucleic acid purification from plants, animals and microbes in under 30 seconds

http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2003916


# Coexpression clustering

Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data

https://www.biorxiv.org/content/early/2017/11/17/221309


# useful bash tools for alignments/trees etc

Phyx: phylogenetic tools for unix

https://academic.oup.com/bioinformatics/article/33/12/1886/2975328


Best,

Eckart

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Dr. Eckart Stolle
Marie Curie IEF PostDoc, Dr. Y. Wurm lab
Queen Mary University of London,

School of Biol. and Chem. Sciences/ Organismal Biology,

Mile End Road, Fogg Building, Room 5.05, London E1 4NS, UK <http://wurmlab.github.io/>

e.stolle at qmul.ac.uk   0044 (0)20 7882 3612   http://wurmlab.github.io<http://wurmlab.github.io/>
<http://wurmlab.github.io/>

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